Dataset generated in Dr. Joe Gray's lab at the Oregon Health and Science University
As part of the Stand Up to Cancer Breast Cancer Dream Team, the Gray laboratory profiled over 70 breast cancer cell lines and screened them with 90 experimental or approved drugs.
Illumina Methylation27 BeadChip
Modeling precision treatment of breast cancer, Genome Biology 2013
| Data Type | Assay/Platform | Raw | Processed |
|---|---|---|---|
| Pharmacological | CellTiter Glo | Yes | IC50 |
| mRNA expression | Affymetrix HG U133A | Yes | RMA |
| Affymetrix GC Exon 1.0 ST | Yes | log-additive PLM | |
| Agilent Automation RNAseq | Yes | FPKM | |
| DNA Copy Number | Affymetrix SNP 6.0 | Yes | GISTIC |
| Methylation | Illumina Infinium Human Methylation27 | Yes | Beta Values |
| Protein Expression | RPPA | No | MicroVigene expression intensity |
| Exomeseq | Agilent Automation | Yes |
